I would like to submit a profile for the Swedish standard edition blu-ray Batman Begins but I find that the UPC has already been used with the Limited edition. When I check online shops they show a different scan of the back with a different UPC for the Limited Edition.

This leads me to believe that the current profile for the LE may have an incorrect scan of the back. (I looks the same as my standard edition and has the same UPC 7321948115216). Could someone who actuallly owns the Swedish Limited edition Giftset please confirm this? Also please post the UPC so it can be corrected (or submit a correct profile yourself ).

(Discshop.se is an example of a shop that has a different scan and UPC of the LE than the profiler entry.
http://www.discshop.se/shop/coverview.php?id=68293&action_b=visabak

That profile was created by bluray74, who it seems does not frequent the forums.
You could always PM them, and ask them to check their giftset UPC.
It's possible, depending on how this giftset looks, that they've used the UPC of the bluray found inside the giftset to create the profile. But ideally they should use the UPC printed on the giftset box itself.
If unfortunately, both versions do have the same UPC, then the best you can do is update the areas common to both releases (cast and crew etc.) and change your own profile locally to match your release - best we can do for now.

Northbloke, you may be right although I have seen some pictures indicating that the giftset is a digipack. Anyhow I will try a PM and see what happens. Thanks.

I don't own it, but I suspect that the LE back cover is just a piece of paper attached to the back of a box set. The owner probably threw it away and only had the included regular blu-ray case to go on when submitting. I would do as northbloke suggests and see what happens.